Nov 12, 2026

Charting the Transcriptional Life of the Mouse Hippocampus and Cortex

By Anthony Berndt, PhD, Wiep van der Toorn, PhD, Kunal Jindal, PhD, Justin Blethrow, PhD, Shaun Cordes, PhD, Nicole Rapicavoli, PhD and Magnolia Bostick, PhD

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Abstract:

The perinatal and early postnatal mouse hippocampus is one of the best-studied neurodevelopmental windows, with well-defined gene expression level changes associated with neurogenesis, synaptogenesis, and glial maturation milestones. Yet few contiguous datasets capture these changes in one framework built for cross-time-point comparison.

We developed a low-cost, high-throughput 3′ RNA-Seq method to characterize transcriptional changes from E18.5 to P28. We compare our results to well-described “textbook” developmental milestones and the associated gene expression dynamics as a benchmark.

 

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